Tumor Evasion and Novel Targets
"Understanding tumor mechanisms of resistance to treatments is the only way to identify new targets and therapeutic combinations that improve the clinical outcomes of current therapies."
DR. JUAN DUBROT ARMENDARIZ RESEARCHER. TUMOR EVASION AND NOVEL TARGETS RESEARCH GROUP
The Tumor Evasion and Novel Targets Research Group of the Cima Solid Tumor Program focuses on understanding the mechanisms by which tumors are able to resist and evade current treatments. Our goal is to identify new therapies and combinations that improve patient survival and quality of life.
Despite the great advances made in oncology during the last decades, most current cancer therapies are ineffective in a relatively high percentage of patients. This is particularly important in more aggressive tumor types such as pancreatic cancer, a highly fatal disease that affects both women and men and is resistant to virtually any type of therapy.
Tumors possess a great capacity for adaptation and are capable of triggering multiple resistance mechanisms in response to treatment. In our Tumor Evasion and Novel Targets research group we seek to identify the resistance mechanisms that limit the antitumor effects of therapies such as radiotherapy or immunotherapy based on checkpoint inhibitors such as PD-1 or CTLA-4.
To carry out our research we have a multidisciplinary team, as well as sophisticated animal models and cutting-edge technologies for the identification of new therapeutic targets for pancreatic cancer. In the laboratory we use functional genomics to identify genes that mediate resistance to treatment by performing in vivo genetic screening experiments in preclinical models of pancreatic cancer. By applying technologies such as single cell transcriptomic analysis (scRNA seq) we can also study changes in the tumor microenvironment that allow us to understand the mechanisms of action of the antitumor response in different contexts.
All this is supported by a close collaboration with other renowned groups, both national and international, located in leading research centers such as the Broad Institute (Cambridge, US) or the Weizmann Institute (Israel).
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Objectives of our research
We aim to design new therapeutic strategies and
improve the treatment and prediction of patients' responses to treatment.
To identify genetic susceptibilities to radio-immunotherapy
To study epigenetic mechanisms associated with resistance to immunotherapy in pancreatic cancer
To develop new therapeutic strategies in pancreatic cancer models
DESIGNING BETTER THERAPIES WITH IMPACT ON PATIENTS
Leading-edge techniques and multidisciplinarity
We are experts in functional genomics techniques, such as in vivo genetic screens that allow the unbiased identification of genes that mediate resistance to treatment through preclinical models of pancreatic cancer.
Our philosophy is based on striving for scientific quality in an environment of solidarity, teamwork, and constant learning.
Lines of research
IP: Juan Dubrot
The immune system and its interactions with tumor cells are essential in cancer progression and treatment. Immunotherapy, particularly immune checkpoint blockade (ICB), has revolutionized cancer treatment in recent years.
Therapeutic blockade of negative regulators of T-cell effector functions, such as CTLA-4 or PD-1, has shown long-term responses in several different cancer types, including metastatic melanoma and lung cancer. However, compared to the results observed in patients with these malignancies, only a residual fraction of pancreatic cancer patients (approximately 2%) exhibited clinical benefit.
An intriguing strategy is the combination of immunotherapy with tumor irradiation. More than half of all cancer patients will receive a radiotherapy (RT) modality during their treatment. Originally, the rationale for its use was based on the ability of RT to kill cancer cells through the direct cytotoxic effects of ionizing radiation (IR). However, indisputable evidence recognized the important role of the host immune system in mediating and modulating the therapeutic effects of IR.
Following irradiation, inflammatory signals occur through activation of cell survival pathways and stimulation of the innate immune system, triggering cytokine production and immune cell recruitment. In addition, IR triggers immunogenic cell death of cancer cells that release tumor-associated antigens and damage-associated molecular patterns that induce activation of professional antigen-presenting cells, ultimately creating an immunostimulatory environment necessary for effective antitumor responses. On the other hand, growing preclinical evidence also indicates that IR induces resistance mechanisms, as evidenced by IR-induced PD-L1 upregulation in cancer and stromal cells and an increased influx of immunoinhibitory populations, such as regulatory T cells or myeloid suppressor cells.
These and other preclinical findings define the perfect scenario for strategies that can interfere with immunosuppressive mechanisms that restrict the anti-tumor effector functions of the immune system. Therefore, efforts to understand the mechanisms of action of this synergy in PDAC represent a great opportunity to address an unmet clinical need. However, although clinical trials are investigating the efficacy of radioimmunotherapy, there is a lack of clear understanding of how the combination works and the mechanisms of resistance that prevent better responses due, in some cases, to toxicities associated with the therapy. This results in large overspending on poorly designed trials and, more importantly, reduces the beneficial impact on many patients.
Using multidisciplinary approaches at different levels, we propose studying tumor changes after treatment to understand how radioimmunotherapy damages tumors and how tumors defend themselves. This will allow us to overcome resistance mechanisms in pancreatic cancer and discover new therapeutic targets.
- Characterize the molecular alterations radiotherapy produces in tumor cells and the tumor microenvironment.
- To discover new therapeutic targets that increase tumor sensitivity to radioimmunotherapy.
IP: Juan Dubrot
Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal disease that affects both women and men. Its high degree of resistance to virtually any type of therapy makes PDAC one of the greatest challenges in cancer. The development of new therapeutic strategies that improve the current clinical outcome in patients with this malignancy is critical. The only option for patients with advanced disease is an aggressive combination of chemotherapeutic agents such as gemcitabine or oxaliplatin, irinotecan, leucovorin and 5-fluorouracil (FOLFIRINOX) which are associated with severe toxicity.
In the present project we will study the reference chemotherapy in the treatment of PDAC (gemcitabine) in combination with PD-1 inhibitor antibodies. Immunotherapy and, in particular, immune checkpoint inhibitors (ICBs) have revolutionized cancer treatment in recent years and have shown long-term responses in several different cancer types. However, only a residual fraction of PDAC patients treated with immunotherapy show clinical benefit, making it crucial to combine them with other strategies.
Epigenetic modifications regulate gene expression and collaborate with genetic alterations to promote and control tumor progression by adapting genetic programs to the needs of the tumor under certain conditions. Importantly, epigenetic programs modulate the tumor microenvironment and can regulate antitumor responses that ultimately result in therapy failure.
Tumors possess multiple mechanisms to counteract a selective pressure caused by anticancer drugs or therapies. These mechanisms allow tumors to adapt to changing environments and meet the needs of the tumor. We will identify by using orthogonal approaches genes that are epigenetically modulated and are likely to mediate resistance to therapy. In addition, we are proposing the first CRISPR-based in vivo genetic screen to identify cancer cell intrinsic epigenetic mechanisms that hinder anti-tumor responses with chemo-immunotherapy in PDAC.
We will use the loss-of-function genetic approach to identify epigenetic regulators that limit in situ antitumor effector functions and thereby discover potentially novel targets that synergize with chemo-immunotherapy for the treatment of PDAC.
The proposed research will provide: i) mechanistic evidence of epigenetic programs causing resistance to therapy and ii) a solid basis for novel combinatorial strategies to enhance antitumor responses in PDAC patients.
- Multiomics characterization of epigenetic regulation in pancreatic cancer.
- Identification of epigenetic mechanisms that contribute to therapy resistance in pancreatic cancer.
Meet the research team
Scientific activity of the Research Group on
Tumor Evasion and New Targets
Latest scientific publications
- Protocol for in vivo CRISPR screening using selective CRISPR antigen removal lentiviral vectors Feb 1, 2023 | Magazine: STAR Protocols
- In vivo CRISPR screens reveal the landscape of immune evasion pathways across cancer [SP] Oct 23, 2022 | Magazine: Nature Immunology
- Mutant-IDH inhibits Interferon- TET2 signaling to promote immunoevasion and tumor maintenance in cholangiocarcinoma Mar 1, 2022 | Magazine: Cancer Discovery
- MHC Class II Antigen Presentation by Lymphatic Endothelial Cells in Tumors Promotes Intratumoral Regulatory T cell- Suppressive Functions Jul 9, 2021 | Magazine: Cancer Immunology Research